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Cambridge Institute for Medical Research

 

Protein folding homeostasis in the endoplasmic reticulum

General audience summary:
Proteins must fold into their correct three-dimensional structure to function properly and cells are adept at detecting and responding to incorrect protein folding. Secreted proteins and membrane proteins — which are often of medical importance — fold in a particular compartment, the endoplasmic reticulum, where misfolded proteins trigger an 'unfolded protein response' that contributes to their extraction and destruction. Our research focuses on the control of this process and the implications of this for protein folding diseases and ageing. We are also investigating emerging connections between the regulation of protein folding and metabolism in the pancreas, liver and fat. Our hope is that better understanding of protein folding and surveillance might provide opportunities for new therapies.

Strategic CIMR themes: Protein Folding and Quality Control, Organelle Biology

Funding: Wellcome Trust

Research Group members:

Ranya Behbehani, Ginto George, Heather Harding, Charlotte Laurent, Lisa Neidhardt,, Adriana Ordonez, Joanne Tung, Yahui Yan

 

Research

Proteins that fail to attain or maintain their structure reduce fitness in part through toxic gain of function mechanisms referred to as "proteotoxicity". The latter conspicuously affects poorly-renewable tissues of long-lived organisms in which the threat of protein misfolding can exert its deleterious consequences over extended periods of time. Protein misfolding is compartment-specific and its extent is influenced by the burden of newly-synthesized unfolded proteins presented to given compartment (cytosol, endoplasmic reticulum, mitochondria) and by the protein folding environment in that compartment. The latter is influenced by structural elements operating within and on the compartment and by its metabolic state. Both parameters are regulated by complex homeostatic pathways, constituting a proteostasis network in which compartment-specific unfolded protein responses (UPR) are important.

Interesting reciprocal links have been uncovered between protein folding homeostasis and metabolism: Defects in handling unfolded protein load and proteotoxic features of rare mutant proteins have revealed the importance of proteostasis to the function of tissues such as the endocrine pancreas, liver and fat that figure heavily in metabolic control. Less well understood, but of potentially considerable importance, are the emerging links between intermediary metabolism and the protein folding environment in the various compartments of the eukaryotic cell. Working with colleagues at the Cambridge Institute for Medical Research, we hope to understand the molecular basis of the aforementioned reciprocal links and thereby uncover informative clinical markers and targets for future therapeutic interventions.

Publications

Key publications: 

Neidhardt L, Tung J, Kuchersky M, Milczarek J, Karga V, Stott K, Rosenzweig R, Ron D and Yan Y. 2025. A structural basis for chaperone repression of stress signalling from the endoplasmic reticulum. bioRxiv 2025.04.14.648677 (2025) doi:10.1101/2025.04.14.648677

Yan Y, Shetty M, Harding HP, George G, Zyryanova A, Labbé K, Mafi A, Hao Q, Sidrauski C and Ron D. 2024. Substrate recruitment via eIF2γ enhances catalytic efficiency of a holophosphatase that terminates the Integrated Stress Response. Proc Natl Acad Sci U S A 121: e2320013121 (PMID: 38547060)

Neidhardt L, Cloots E, Friemel N, Weiss C, Harding H, McLaughlin SH, Janssens S and Ron D. 2023. The ire1β-mediated unfolded protein response is repressed by the chaperone agr2 in mucin producing cells. EMBO J (doi:10.1038/s44318-023-00014-z) (PMID: 38177498)

Perera LA, Preissler S, Zaccai NR, Prévost S, Devos JM, Haertlein M and Ron D. 2021. Structures of a deAMPylation complex rationalise the switch between antagonistic catalytic activities of FICD. Nature communications 12:5004 (10.1038/s41467-021-25076-7) (PMID: 34408154) (PMCID: PMC8373988)

Yan Y, Harding HP and Ron D. 2021. Higher-order phosphatase-substrate contacts terminate the integrated stress response. Nat Struct Mol Biol 28:835-46 (10.1038/s41594-021-00666-7) (PMID: 34625748) (PMCID: PMC8500838)

Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, L.A. P, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T and Ron D. 2021. ISRIB blunts the integrated stress response by allosterically antagonising the inhibitory effect of phosphorylated eIF2 on eIF2B. Mol Cell  81:88-103 e6 (10.1016/j.molcel.2020.10.031, Epub 2020 Nov 20) (PMID:33220178) (PMCID: PMC7837216)

 

Professor of Cellular Pathophysiology and Clinical Biochemistry
Wellcome Trust Principal Research Fellow

Contact Details

dr360@cam.ac.uk
01223 768 940
Not available for consultancy

Affiliations

Classifications: 
Departments and institutes: 
College: 
Churchill College